OBO Foundry dashboard analysis¶

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/tmp/ipykernel_533/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    4
unknown           1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 6159.2 6070.793498 0.0 1872.0 5352.0 8103.0 15469.0
Declaration 4 937.0 691.771639 0.0 486.0 1212.0 1231.0 1756.0
SubClassOf 4 1022.6 719.990139 0.0 622.0 1140.0 1653.0 1698.0
ObjectPropertyDomain 3 30.8 40.145984 0.0 0.0 10.0 53.0 91.0
SubObjectPropertyOf 3 37.4 48.101975 0.0 0.0 7.0 90.0 90.0
ObjectPropertyRange 3 28.2 37.512665 0.0 0.0 10.0 44.0 87.0
DisjointClasses 3 17.2 17.824141 0.0 0.0 19.0 25.0 42.0
TransitiveObjectProperty 2 3.2 4.438468 0.0 0.0 0.0 7.0 9.0
ClassAssertion 2 4.0 8.396428 0.0 0.0 0.0 1.0 19.0
SymmetricObjectProperty 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
DataPropertyRange 2 5.0 10.630146 0.0 0.0 0.0 1.0 24.0
EquivalentClasses 2 5.2 8.671793 0.0 0.0 0.0 6.0 20.0
EquivalentObjectProperties 2 4.0 7.382412 0.0 0.0 0.0 3.0 17.0
FunctionalObjectProperty 2 2.0 2.828427 0.0 0.0 0.0 4.0 6.0
InverseObjectProperties 2 12.0 16.673332 0.0 0.0 0.0 26.0 34.0
IrrefexiveObjectProperty 2 1.0 1.732051 0.0 0.0 0.0 1.0 4.0
SubAnnotationPropertyOf 2 5.2 8.288546 0.0 0.0 0.0 7.0 19.0
SubDataPropertyOf 1 2.2 4.919350 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
SubPropertyChainOf 1 3.0 6.708204 0.0 0.0 0.0 0.0 15.0
FunctionalDataProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
ObjectPropertyAssertion 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
DifferentIndividuals 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
DataPropertyDomain 1 2.2 4.919350 0.0 0.0 0.0 0.0 11.0
AnnotationPropertyRangeOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0
AnnotationPropertyDomain 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
InverseFunctionalObjectProperty 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 2968.8 2104.208331 0.0 1730.0 3399.0 4711.0 5004.0
ObjectAllValuesFrom 3 9.2 13.700365 0.0 0.0 6.0 7.0 33.0
ObjectSomeValuesFrom 3 179.2 279.044262 0.0 0.0 76.0 155.0 665.0
ObjectUnionOf 3 10.6 17.938785 0.0 0.0 2.0 9.0 42.0
DataSomeValuesFrom 2 5.4 11.523888 0.0 0.0 0.0 1.0 26.0
ObjectComplementOf 2 6.8 13.084342 0.0 0.0 0.0 4.0 30.0
ObjectExactCardinality 2 0.4 0.547723 0.0 0.0 0.0 1.0 1.0
ObjectIntersectionOf 2 9.2 12.774976 0.0 0.0 0.0 20.0 26.0
ObjectMinCardinality 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
DataExactCardinality 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
DataMinCardinality 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
ObjectMaxCardinality 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
ObjectOneOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
4 t4fs 0.419 0.838 0.0
1 mcro 0.386 0.771 0.0
2 ngbo 0.363 0.727 0.0
0 bpdo 0.334 0.667 0.0
3 scho 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 5.0 0.3004 0.170793 0.0 0.334 0.363 0.386 0.419
score_dash 5.0 0.6006 0.341504 0.0 0.667 0.727 0.771 0.838
score_impact 5.0 0.0000 0.000000 0.0 0.000 0.000 0.000 0.000

OBO dependency graph